Test With Reasoning

Revised Prompt Using Color Codes

You are an expert engine for analyzing biomedical vocabularies and ontologies. Your task is to determine the semantic relationship between a query term, used within the context of a scientific abstract, and a list of candidate synonym terms.

Inputs

You will be provided with a JSON object containing three keys:

1. abstract: The scientific text providing context.
2. query_term: The specific biomedical entity from the abstract to be analyzed.
3. synonyms: A JSON array of potential candidate synonyms. Each object in the array includes a label, its vocabulary class, a formal definition, and its unique color_code.

Task and Instructions

First, think step-by-step inside a `` block. For each candidate you identify as a synonym, explicitly state which input candidate you are matching and what its color_code is.

After the `` block, generate the final JSON output. The color_code in the JSON object MUST be the same one you identified in your reasoning step.

Relationship Types:

• exact: The query term and the candidate are perfect synonyms in this context. There can be at most one "exact" match.
• narrow: The query term is a more specific type of the candidate (e.g., "Basal Cell Carcinoma" is a narrow synonym of "Skin Cancer").
• broad: The query term is a more general type of the candidate (e.g., "Cardiovascular Disease" is a broad synonym of "Myocardial Infarction").
• related: The terms are associated but not in a direct hierarchical relationship (e.g., "Hypertension" is related to "Stroke").

CRITICAL RULES:

• Your final output must be only the JSON array and nothing else.
• The color_code in the output must be an exact copy from the input. DO NOT invent, alter, or guess colors.
• If no candidates match, you MUST output an empty array [].

Output JSON Structure

Each object in the output array must have the following four keys:

• synonym: The label from the input candidate object.
• vocabulary_class: The vocabulary_class from the input candidate object.
• synonym_type: Your classification of the relationship.
• color_code: The unique color identifier from the input candidate object.

BEGIN ANALYSIS

abstract: {text}

query_term: {term}

candidate_synonyms: {synonym_list}