Preprint
Machine Learning

A comprehensive survey of foundation models in medicine

January 1, 2025

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2025

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Abstract

… foundation models. Details can be found in Supplementary Materials Section II. … lab results, and radiology images—medical foundation models develop a richer understanding of patient …

Analysis

Why This Paper Matters

Foundation models have revolutionized AI by enabling transfer learning across tasks, and their application to medicine holds transformative potential. This survey is timely as the medical field grapples with integrating heterogeneous data—from electronic health records to imaging—into unified models. By systematically reviewing current approaches, the paper provides a roadmap for leveraging these models to improve diagnostic accuracy, treatment planning, and patient outcomes. It underscores the shift from task-specific models to generalist medical AI, which could democratize access to expert-level analysis.

Technical Contributions

The paper's main contribution is its comprehensive taxonomy of medical foundation models, organized by data modality (e.g., text, imaging, genomics) and architecture (e.g., transformers, multimodal fusion). Key innovations highlighted include:

  • Multimodal integration: Combining lab results, radiology images, and clinical notes to create holistic patient representations.
  • Pre-training strategies: Use of large-scale, unlabeled medical data for self-supervised learning, reducing reliance on expensive annotations.
  • Domain adaptation: Techniques to fine-tune general foundation models for specific medical tasks, such as disease diagnosis or drug discovery.

Results

As a survey, the paper does not present new experimental results. Instead, it aggregates findings from numerous studies, noting that foundation models have achieved state-of-the-art performance on benchmarks like medical question answering (e.g., MedQA) and image classification (e.g., chest X-ray interpretation). However, it also reports that performance varies significantly across tasks and datasets, with challenges in generalization to rare diseases and demographic biases.

Significance

This survey is significant for the AI community as it consolidates a rapidly growing field, providing a clear picture of current capabilities and limitations. It emphasizes the need for robust evaluation frameworks and ethical considerations, such as fairness and privacy, before clinical deployment. By highlighting successful applications and open challenges, it sets the stage for future innovations that could make foundation models a cornerstone of precision medicine.